miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86114148|gb|BB925357.1|BB925357 CTTTGTCACATGCCAAAACTTCTATCAAGAAAACTACATTGAGACCCTTTGCATCTCTTAACTCTTCTTCTTCCTCTTCA
TCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCCTTTCATCACTCCAATTTTGAGAGA
AGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGACTTGAAAGCCACAG
CAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGATCAGTTACAGCTCAAGCTGCAACACCATCATCATCTGATGGT
ATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCATTCACTTCAAGAAAGAGAAATATGACAAGAATCCAGC
TTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTATATGGTGTTTGCATGCTCAGACTCAAGAGTCTGCCCATCTC
ATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCAGAAATGTTGCTAACTTGGTTCCACCATATGACCAGGCAAAA
TATGCTGGAACT




Most similar to sp|P17067|CAHC_PEA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score =  310 bits (795), Expect = 3e-84
 Identities = 161/192 (83%), Positives = 169/192 (88%), Gaps = 2/192 (1%)
 Frame = +3

Query: 3   LSHAKTSIKKTTLRPF--ASLNXXXXXXXXTFPSLIQDKPVFASSSPFITPILREEMGKG 176
           LS AKTS K+TTLRPF  ASLN        TFPSLIQDKPVFASSSP ITP+LREEMGKG
Sbjct: 14  LSPAKTSTKRTTLRPFVSASLNTSSSSSSSTFPSLIQDKPVFASSSPIITPVLREEMGKG 73

Query: 177 YEEAIQELEKLLREKADLKATAAEKVEQITAQLGSVTAQAATPSSSDGIPTSEASERIKT 356
           Y+EAI+EL+KLLREK +LKATAAEKVEQITAQLG       T SSSDGIP SEASERIKT
Sbjct: 74  YDEAIEELQKLLREKTELKATAAEKVEQITAQLG-------TTSSSDGIPKSEASERIKT 126

Query: 357 GFIHFKKEKYDKNPALYGELAKGQSPPYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANL 536
           GF+HFKKEKYDKNPALYGELAKGQSPP+MVFACSDSRVCPSHVLDFQPGEAFVVRNVANL
Sbjct: 127 GFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANL 186

Query: 537 VPPYDQAKYAGT 572
           VPPYDQAKYAGT
Sbjct: 187 VPPYDQAKYAGT 198